Publications

Last updated: August 21, 2025

* Indicates co-first author.

Date Article Authors badges
2023 Aug Machine Learning Classification by Fitting Amplicon Sequences to Existing OTUs. mSphere Armour CR, Sovacool KL, Close WL, Topçuoğlu BD, Wiens J, Schloss PD
2022 Jul Intestinal Inflammation Reversibly Alters the Microbiota to Drive Susceptibility to Clostridioides Difficile Colonization in a Mouse Model of Colitis. mBio Barron MR, Sovacool KL, Abernathy-Close L, Vendrov KC, Standke AK, Bergin IL, Schloss PD, Young VB
2022 Feb OptiFit: An Improved Method for Fitting Amplicon Sequences to Existing OTUs. mSphere Sovacool KL, Westcott SL, Mumphrey MB, Dotson GA, Schloss PD
2022 Jan Developing and Deploying an Integrated Workshop Curriculum Teaching Computational Skills for Reproducible Research. JOSE *Lapp Z, *Sovacool KL, Lesniak N, King D, Barnier C, Flickinger M, Krüger J, Armour CR, Lapp MM, Tallant J, Diao R, Oneka M, Tomkovich S, Anderson JM, Lucas SK, Schloss PD
2021 Dec Teaching Python for Data Science: Collaborative Development of a Modular & Interactive Curriculum. JOSE *Duda M, *Sovacool KL, Farzaneh N, Nguyen VK, Haynes SE, Falk H, Furman KL, Walker LA, Diao R, Oneka M, Drotos AC, Woloshin A, Dotson GA, Kriebel A, Meng L, Thiede SN, Lapp Z, Wolford BN
2021 May Mikropml: User-Friendly R Package for Supervised Machine Learning Pipelines. JOSS *Topçuoğlu BD, *Lapp Z, *Sovacool KL, Snitkin E, Wiens J, Schloss PD
2021 Apr Geography Is More Important than Life History in the Recent Diversification of the Tiger Salamander Complex. PNAS Everson KM, Gray LN, Jones AG, Lawrence NM, Foley ME, Sovacool KL, Kratovil JD, Hotaling S, Hime PM, Storfer A, Parra-Olea G, Percino-Daniel R, Aguilar-Miguel X, O’Neill EM, Zambrano L, Shaffer HB, Weisrock DW
2020 Aug Ten Simple Rules to Increase Computational Skills among Biologists with Code Clubs. PLoS Comput Biol Hagan AK, Lesniak NA, Balunas MJ, Bishop L, Close WL, Doherty MD, Elmore AG, Flynn KJ, Hannigan GD, Koumpouras CC, Jenior ML, Kozik AJ, McBride K, Rifkin SB, Stough J, Sovacool KL, Sze MA, Tomkovich S, Topcuoglu BD, Schloss PD
2016 Aug Processing RNA-Seq Data of Plants Infected with Coffee Ringspot Virus. BMC Bioinform Goodin MM, Farman M, Inocencio H, Jang C, Jaromczyk JW, Moore N, Sovacool KL
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