Bioinformatics Resources

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Resources for Bioinformatics Software Development & Data Analysis

I found myself sending some of the same links over and over again to people who asked questions related to bioinformatics. So it was time to compile all the links in one convenient place!

All of the resources linked below are free unless otherwise noted. This isn’t intended to be an exhaustive list of all the resources available, just some of the ones I have come across and have found useful.

Last updated: 2019-09-23

Table of Contents:

Programming

Shell

Python

R

Reproducibility

Project organization

Literate programming

R Markdown

Jupyter

Documentation

Editors

Misc.

  • csvkit: command-line tool for working with and converting to CSV format from Excel, JSON, etc.
  • Hypothesis Python testing module.