Bioinformatics Resources

Bioinformatics Software Development Data Analysis Reproducibility Python R git

Resources for Bioinformatics Software Development & Data Analysis

I found myself sending some of the same links over and over again to people who asked questions related to bioinformatics. So it was time to compile all the links in one convenient place!

All of the resources linked below are free unless otherwise noted. This isn’t intended to be an exhaustive list of all the resources available, just some of the ones I have come across and have found useful.

Last updated: 2019-09-23

Programming

Shell

Git

Python

R

Reproducibility

Project organization

Literate programming

R Markdown

Jupyter

Documentation

Editors

Misc.

Corrections

If you see mistakes or want to suggest changes, please create an issue on the source repository.